Balachandran Manavalan: search on Z-Library

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1

mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation

Manavalan, Balachandran, Basith, Shaherin, Shin, Tae Hwan, Wei, Leyi, Lee, Gwang, Hancock, John

Journal:

Year:

2018

Language:

english

File:

PDF, 656 KB

english, 2018

2

i4mC-ROSE, a bioinformatics tool for the identification of DNA N4-methylcytosine sites in the Rosaceae genome

Hasan, Md. Mehedi, Manavalan, Balachandran, Khatun, Mst. Shamima, Kurata, Hiroyuki

Journal:

International Journal of Biological Macromolecules

Year:

2019

File:

PDF, 2.05 MB

2019

3

Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening

Basith, Shaherin, Manavalan, Balachandran, Hwan Shin, Tae, Lee, Gwang

Journal:

Medicinal Research Reviews

Year:

2020

Language:

english

File:

PDF, 3.12 MB

english, 2020

4

Toll-like receptor modulators: a patent review (2006 – 2010)

Basith, Shaherin, Manavalan, Balachandran, Lee, Gwang, Kim, Sang Geon, Choi, Sangdun

Journal:

Expert Opinion on Therapeutic Patents

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

5

Machine-learning-based prediction of cell-penetrating peptides and their uptake efficiency with improved accuracy

Manavalan, Balachandran, Subramaniyam, Sathiyamoorthy, Shin, Tae Hwan, Kim, Myeong Ok, Lee, Gwang

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 1.94 MB

english, 2018

6

i6mA-Fuse: improved and robust prediction of DNA 6Â mA sites in the Rosaceae genome by fusing multiple feature representation

Hasan, Md. Mehedi, Manavalan, Balachandran, Shoombuatong, Watshara, Khatun, Mst. Shamima, Kurata, Hiroyuki

Journal:

Plant Molecular Biology

Year:

2020

File:

PDF, 2.55 MB

2020

7

Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework

Wei, Leyi, He, Wenjia, Malik, Adeel, Su, Ran, Cui, Lizhen, Manavalan, Balachandran

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 1.73 MB

2020

8

Iterative feature representations improve N4-methylcytosine site prediction

Wei, Leyi, Su, Ran, Luan, Shasha, Liao, Zhijun, Manavalan, Balachandran, Zou, Quan, Shi, Xiaolong, Hancock, John

Journal:

Year:

2019

Language:

english

File:

PDF, 726 KB

english, 2019

9

Template based protein structure modeling by global optimization in CASP11

Joo, Keehyoung, Joung, InSuk, Lee, Sun Young, Kim, Jong Yun, Cheng, Qianyi, Manavalan, Balachandran, Joung, Jong Young, Heo, Seungryong, Lee, Juyong, Nam, Mikyung, Lee, In-Ho, Lee, Sung Jong, Lee, Joo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 882 KB

english, 2015

10

PIP-EL: A New Ensemble Learning Method for Improved Proinflammatory Peptide Predictions

Manavalan, Balachandran, Shin, Tae Hwan, Kim, Myeong Ok, Lee, Gwang

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 4.37 MB

english, 2018

11

iGHBP: Computational identification of growth hormone binding proteins from sequences using extremely randomised tree

Basith, Shaherin, Manavalan, Balachandran, Shin, Tae Hwan, Lee, Gwang

Journal:

Computational and Structural Biotechnology Journal

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

12

i4mC-Mouse: Improved identification of DNA N4-methylcytosine sites in the mouse genome using multiple encoding schemes

Hasan, Md. Mehedi, Manavalan, Balachandran, Shoombuatong, Watshara, Khatun, Mst. Shamima, Kurata, Hiroyuki

Journal:

Computational and Structural Biotechnology Journal

Year:

2020

File:

PDF, 1.90 MB

2020

13

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools

Su, Ran, Hu, Jie, Zou, Quan, Manavalan, Balachandran, Wei, Leyi

Journal:

Briefings in Bioinformatics

Year:

2019

File:

PDF, 11.74 MB

2019

14

Silica-coated magnetic nanoparticles induce glucose metabolic dysfunction in vitro via the generation of reactive oxygen species

Shin, Tae Hwan, Seo, Chan, Lee, Da Yeon, Ji, Moongi, Manavalan, Balachandran, Basith, Shaherin, Chakkarapani, Suresh Kumar, Kang, Seong Ho, Lee, Gwang, Paik, Man Jeong, Park, Chan Bae

Journal:

Archives of Toxicology

Year:

2019

File:

PDF, 4.35 MB

2019

15

AIPpred: Sequence-Based Prediction of Anti-inflammatory Peptides Using Random Forest

Manavalan, Balachandran, Shin, Tae H., Kim, Myeong O., Lee, Gwang

Journal:

Frontiers in Pharmacology

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

16

MLACP: machine-learning-based prediction of anticancer peptides

Manavalan, Balachandran, Basith, Shaherin, Shin, Tae Hwan, Choi, Sun, Kim, Myeong Ok, Lee, Gwang

Journal:

Year:

2017

Language:

english

File:

PDF, 4.22 MB

english, 2017

17

HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation

Hasan, Md. Mehedi, Schaduangrat, Nalini, Basith, Shaherin, Lee, Gwang, Shoombuatong, Watshara, Manavalan, Balachandran, Elofsson, Arne

Journal:

Year:

2020

File:

PDF, 537 KB

2020

18

Similar Structures but Different Roles – An Updated Perspective on TLR Structures

Manavalan, Balachandran, Basith, Shaherin, Choi, Sangdun

Journal:

Frontiers in Physiology

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

19

Protein Structure Modeling and Refinement by Global Optimization in CASP12

Hong, Seung Hwan, Joung, InSuk, Flores-Canales, Jose C., Manavalan, Balachandran, Cheng, Qianyi, Heo, Seungryong, Kim, Jong Yun, Lee, Sun Young, Nam, Mikyung, Joo, Keehyoung, Lee, In-Ho, Lee, Sung Jon

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

20

PFDB: A standardized protein folding database with temperature correction

Manavalan, Balachandran, Kuwajima, Kunihiro, Lee, Jooyoung

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.44 MB

2019

21

Comparative Analysis of Species-Specific Ligand Recognition in Toll-Like Receptor 8 Signaling: A Hypothesis

Govindaraj, Rajiv Gandhi, Manavalan, Balachandran, Basith, Shaherin, Choi, Sangdun, Sambhara, Suryaprakash

Journal:

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

22

Computational prediction of species-specific yeast DNA replication origin via iterative feature representation

Manavalan, Balachandran, Basith, Shaherin, Shin, Tae Hwan, Lee, Gwang

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 1.41 MB

2020

23

Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases

Balachandran Manavalan, Senthil K Murugapiran, Gwang Lee, Sangdun Choi

Journal:

BMC Structural Biology

Year:

2010

Language:

english

File:

PDF, 2.24 MB

english, 2010

24

Bidirectional Transcriptome Analysis of Rat Bone Marrow-Derived Mesenchymal Stem Cells and Activated Microglia in an In Vitro Coculture System

Lee, Da Yeon, Jin, Moon Suk, Manavalan, Balachandran, Kim, Hak Kyun, Song, Jun Hyeok, Shin, Tae Hwan, Lee, Gwang

Journal:

Stem Cells International

Year:

2018

Language:

english

File:

PDF, 5.74 MB

english, 2018

25

Prediction of S -nitrosylation sites by integrating support vector machines and random forest

Hasan, Md. Mehedi, Manavalan, Balachandran, Khatun, Mst. Shamima, Kurata, Hiroyuki

Journal:

Molecular Omics

Year:

2019

File:

PDF, 2.39 MB

2019

26

Metabolome Changes in Cerebral Ischemia

Shin, Tae Hwan, Lee, Da Yeon, Basith, Shaherin, Manavalan, Balachandran, Paik, Man Jeong, Rybinnik, Igor, Mouradian, M. Maral, Ahn, Jung Hwan, Lee, Gwang

Journal:

Year:

2020

File:

PDF, 3.08 MB

2020

27

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework

Hasan, Md Mehedi, Basith, Shaherin, Khatun, Mst Shamima, Lee, Gwang, Manavalan, Balachandran, Kurata, Hiroyuki

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 2.51 MB

2020

28

Molecular Modeling-Based Evaluation of hTLR10 and Identification of Potential Ligands in Toll-Like Receptor Signaling

Govindaraj, Rajiv Gandhi, Manavalan, Balachandran, Lee, Gwang, Choi, Sangdun, Selvarajoo, Kumar

Journal:

Year:

2010

Language:

english

File:

PDF, 3.84 MB

english, 2010

29

Methods for estimation of model accuracy in CASP12

Elofsson, Arne, Joo, Keehyoung, Keasar, Chen, Lee, Jooyoung, Maghrabi, Ali H. A., Manavalan, Balachandran, McGuffin, Liam J., Ménendez Hurtado, David, Mirabello, Claudio, Pilstål, Robert, Sidi, Tomer,

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.70 MB

english, 2017

30

A Molecular Dynamics Approach to Explore the Intramolecular Signal Transduction of PPAR-α

Basith, Shaherin, Manavalan, Balachandran, Shin, Tae, Lee, Gwang

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 4.78 MB

english, 2019

31

Silica-coated magnetic nanoparticles induce glucose metabolic dysfunction in vitro via the generation of reactive oxygen species

Shin, Tae Hwan, Seo, Chan, Lee, Da Yeon, Ji, Moongi, Manavalan, Balachandran, Basith, Shaherin, Chakkarapani, Suresh Kumar, Kang, Seong Ho, Lee, Gwang, Paik, Man Jeong, Park, Chan Bae

Journal:

Archives of Toxicology

Year:

2019

Language:

english

File:

PDF, 4.35 MB

english, 2019

32

Molecular modeling-based evaluation of dual function of IκBζ ankyrin repeat domain in toll-like receptor signaling

Balachandran Manavalan, Rajivgandhi Govindaraj, Gwang Lee, Sangdun Choi

Journal:

Journal of Molecular Recognition

Year:

2011

Language:

english

File:

PDF, 3.23 MB

english, 2011

33

Roles of toll-like receptors in Cancer: A double-edged sword for defense and offense

Basith, Shaherin, Manavalan, Balachandran, Yoo, Tae Hyeon, Kim, Sang Geon, Choi, Sangdun

Journal:

Archives of Pharmacal Research

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

34

PFDB: A standardized protein folding database with temperature correction

Manavalan, Balachandran, Kuwajima, Kunihiro, Lee, Jooyoung

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.44 MB

english, 2019

35

PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine

Manavalan, Balachandran, Shin, Tae H., Lee, Gwang

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 4.27 MB

english, 2018

36

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides

Boopathi, Vinothini, Subramaniyam, Sathiyamoorthy, Malik, Adeel, Lee, Gwang, Manavalan, Balachandran, Yang, Deok-Chun

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 2.90 MB

english, 2019

37

SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome

Basith, Shaherin, Manavalan, Balachandran, Shin, Tae Hwan, Lee, Gwang

Journal:

Molecular Therapy — Nucleic Acids

Year:

2019

Language:

english

File:

PDF, 1.64 MB

english, 2019

38

iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction

Manavalan, Balachandran, Govindaraj, Rajiv Gandhi, Shin, Tae Hwan, Kim, Myeong Ok, Lee, Gwang

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 4.01 MB

english, 2018

39

[IEEE 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, DC, USA (2015.11.9-2015.11.12)] 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Structure-based protein folding type classification and folding rate prediction

Manavalan, Balachandran, Kuwajima, Kunihiro, Joung, Insuk, Lee, Jooyoung

Year:

2015

Language:

english

File:

PDF, 176 KB

english, 2015

40

Empirical Comparison and Analysis of Web-based DNA N4-methylcytosine Site Prediction Tools

Manavalan, Balachandran, Hasan, Md. Mehedi, Basith, Shaherin, Gosu, Vijayakumar, Shin, Tae-Hwan, Lee, Gwang

Journal:

Molecular Therapy — Nucleic Acids

Year:

2020

File:

PDF, 4.13 MB

2020

41

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools

Su, Ran, Hu, Jie, Zou, Quan, Manavalan, Balachandran, Wei, Leyi

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 11.74 MB

english, 2019

42

SVMQA: Support–vector-machine-based protein single-model quality assessment

Manavalan, Balachandran, Lee, Jooyoung

Journal:

Year:

2017

Language:

english

File:

PDF, 603 KB

english, 2017

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